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1

Survival prediction using gene expression data: A review and comparison

Wessel N. van Wieringen, David Kun, Regina Hampel, Anne-Laure Boulesteix

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 1.18 MB

english, 2009

2

Modeling and Evaluating Repeatability and Reproducibility of Ordinal Classifications

de Mast, Jeroen, van Wieringen, Wessel N.

Journal:

Year:

2010

Language:

english

File:

PDF, 479 KB

english, 2010

3

Ridge estimation of inverse covariance matrices from high-dimensional data

van Wieringen, Wessel N., Peeters, Carel F.W.

Journal:

Computational Statistics & Data Analysis

Year:

2016

Language:

english

File:

PDF, 2.21 MB

english, 2016

4

Ridge estimation of the VAR(1) model and its time series chain graph from multivariate time-course omics data

Miok, Viktorian, Wilting, Saskia M., van Wieringen, Wessel N.

Journal:

Biometrical Journal

Year:

2017

Language:

english

File:

PDF, 646 KB

english, 2017

5

An empirical Bayes approach to network recovery using external knowledge

Kpogbezan, Gino B., van der Vaart, Aad W., van Wieringen, Wessel N., Leday, Gwenaël G. R., van de Wiel, Mark A.

Journal:

Biometrical Journal

Year:

2017

Language:

english

File:

PDF, 838 KB

english, 2017

6

Reconstruction of molecular network evolution from cross-sectional omics data

Aflakparast, Mehran, de Gunst, Mathisca C. M., van Wieringen, Wessel N.

Journal:

Biometrical Journal

Year:

2018

Language:

english

File:

PDF, 1.47 MB

english, 2018

7

Measurement System Analysis for Categorical Measurements: Agreement and Kappa-Type Indices

De Mast, Jeroen, Van Wieringen, Wessel N.

Journal:

Journal of Quality Technology

Year:

2007

Language:

english

File:

PDF, 389 KB

english, 2007

8

Rscreenorm: normalization of CRISPR and siRNA screen data for more reproducible hit selection

Bachas, Costa, Hodzic, Jasmina, van der Mijn, Johannes C., Stoepker, Chantal, Verheul, Henk M. W., Wolthuis, Rob M. F., Felley-Bosco, Emanuela, van Wieringen, Wessel N., van Beusechem, Victor W., Brak

Journal:

BMC Bioinformatics

Year:

2018

Language:

english

File:

PDF, 1.49 MB

english, 2018

9

Updating of the Gaussian graphical model through targeted penalized estimation

van Wieringen, Wessel N., Stam, Koen A., Peeters, Carel F.W., van de Wiel, Mark A.

Journal:

Journal of Multivariate Analysis

Year:

2020

File:

PDF, 485 KB

2020

10

Flow cytometric CD34+ stem cell enumeration: Lessons from nine years' external quality assessment within the Benelux countries

Wilfried H. B. M. Levering, Frank W. M. B. Preijers, Wessel N. van Wieringen, Jaco Kraan, Wil A. M. van Beers, Kees Sintnicolaas, Dick J. van Rhenen, Jan W. Gratama

Journal:

Cytometry Part B: Clinical Cytometry

Year:

2007

Language:

english

File:

PDF, 184 KB

english, 2007

11

Flow cytometric lymphocyte subset enumeration: 10 years of external quality assessment in the Benelux countries

Wilfried H. B. M. Levering, Wessel N. van Wieringen, Jaco Kraan, Wil A. M. van Beers, Kees Sintnicolaas, Dick J. van Rhenen, Jan W. Gratama

Journal:

Cytometry Part B: Clinical Cytometry

Year:

2008

Language:

english

File:

PDF, 201 KB

english, 2008

12

Integrated genomic and transcriptional profiling identifies chromosomal loci with altered gene expression in cervical cancer

Saskia M. Wilting, Jillian de Wilde, Chris J. L. M. Meijer, Johannes Berkhof, Yajun Yi, Wessel N. van Wieringen, Boudewijn J. M. Braakhuis, Gerrit A. Meijer, Bauke Ylstra, Peter J. F. Snijders, Renske

Journal:

Genes, Chromosomes and Cancer

Year:

2008

Language:

english

File:

PDF, 301 KB

english, 2008

13

Copy number gain at 8q12.1-q22.1 is associated with a malignant tumor phenotype in salivary gland myoepitheliomas

Hedy Vékony, Kerstin Röser, Thomas Löning, Bauke Ylstra, Gerrit A. Meijer, Wessel N. van Wieringen, Mark A. van de Wiel, Beatriz Carvalho, Klaas Kok, C. René Leemans, Isaäc van der Waal, Elisabeth Blo

Journal:

Genes, Chromosomes and Cancer

Year:

2009

Language:

english

File:

PDF, 285 KB

english, 2009

14

Identification of genes putatively involved in the pathogenesis of diffuse large B-cell lymphomas by integrative genomics

Joost J. Oudejans, Wessel N. van Wieringen, Serge J. Smeets, Marianne Tijssen, Sjoerd J. Vosse, Chris J. L. M. Meijer, Gerrit A. Meijer, Mark A. van de Wiel, Bauke Ylstra

Journal:

Genes, Chromosomes and Cancer

Year:

2009

Language:

english

File:

PDF, 235 KB

english, 2009

15

On identifiability of certain latent class models

Wessel N. van Wieringen

Journal:

Statistics & Probability Letters

Year:

2005

Language:

english

File:

PDF, 176 KB

english, 2005

16

Genomic profiling identifies common HPV-associated chromosomal alterations in squamous cell carcinomas of cervix and head and neck

Saskia M Wilting, Serge J Smeets, Peter JF Snijders, Wessel N van Wieringen, Mark A van de Wiel, Gerrit A Meijer, Bauke Ylstra, C René Leemans, Chris JLM Meijer, Ruud H Brakenhoff, Boudewijn JM Braakh

Journal:

BMC Medical Genomics

Year:

2009

Language:

english

File:

PDF, 2.13 MB

english, 2009

17

Measurement System Analysis for Bounded Ordinal Data

Jeroen de Mast, Wessel van Wieringen

Journal:

Quality and Reliability Engineering International

Year:

2004

Language:

english

File:

PDF, 195 KB

english, 2004

18

Nonparametric Testing for DNA Copy Number Induced Differential mRNA Gene Expression

Wessel N. van Wieringen, Mark A. van de Wiel

Journal:

Year:

2009

Language:

english

File:

PDF, 271 KB

english, 2009

19

Chromosomal profiles of high-grade cervical intraepithelial neoplasia relate to duration of preceding high-risk human papillomavirus infection

Mariska Bierkens, Saskia M. Wilting, Wessel N. van Wieringen, Folkert J. van Kemenade, Maaike C.G. Bleeker, Ekaterina S. Jordanova, Marjolein Bekker-Lettink, Mark A. van de Wiel, Bauke Ylstra, Chris J

Journal:

International Journal of Cancer

Year:

2012

Language:

english

File:

PDF, 614 KB

english, 2012

20

Genomic aberrations relate early and advanced stage ovarian cancer

Afra Zaal, Wouter J. Peyrot, P. M. J. J. Berns, Maria E. L. van der Burg, Jan H. W. Veerbeek, J. Baptist Trimbos, Isabelle Cadron, Paul J. van Diest, Wessel N. van Wieringen, Oscar Krijgsman, Gerrit A

Journal:

Cellular Oncology

Year:

2012

Language:

english

File:

PDF, 637 KB

english, 2012

21

The promise of DNA copy number-based classification for diagnostic applications

Serge J. Smeets, Ulrike Harjes, Wessel N. van Wieringen, Bauke Ylstra

Journal:

Cancer Genetics and Cytogenetics

Year:

2010

Language:

english

File:

PDF, 32 KB

english, 2010

22

HPV type-related chromosomal profiles in high-grade cervical intraepithelial neoplasia

Mariska Bierkens, Saskia M Wilting, Wessel N van Wieringen, Mark A van de Wiel, Bauke Ylstra, Chris JLM Meijer, Peter JF Snijders, Renske DM Steenbergen

Journal:

Year:

2012

Language:

english

File:

PDF, 631 KB

english, 2012

23

Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses

Wessel N van Wieringen, Kristian Unger, Gwenaël GR Leday, Oscar Krijgsman, Renée X de Menezes, Bauke Ylstra, Mark A van de Wiel

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 337 KB

english, 2012

24

A Test for Partial Differential Expression

van Wieringen, Wessel N, van de Wiel, Mark A, van der Vaart, Aad W

Journal:

Journal of the American Statistical Association

Year:

2008

Language:

english

File:

PDF, 464 KB

english, 2008

25

Measurement System Analysis for Binary Data

van Wieringen, Wessel N., de Mast, Jeroen

Journal:

Year:

2008

Language:

english

File:

PDF, 320 KB

english, 2008

26

CD98 marks a subpopulation of head and neck squamous cell carcinoma cells with stem cell properties

Martens-de Kemp, Sanne R., Brink, Arjen, Stigter-van Walsum, Marijke, Damen, J. Mirjam A., Rustenburg, François, Wu, Thijs, van Wieringen, Wessel N., Schuurhuis, Gerrit Jan, Braakhuis, Boudewijn J.M.,

Journal:

Stem Cell Research

Year:

2013

Language:

english

File:

PDF, 2.47 MB

english, 2013

27

Measurement System Analysis for Binary Data

Wessel N. Van Wieringen and Jeroen De Mast

Journal:

Year:

2008

Language:

english

File:

PDF, 1.56 MB

english, 2008

28

A Test for Partial Differential Expression

Wessel N. Van Wieringen, Mark A. Van De Wiel and Aad W. Van Der Vaart

Journal:

Journal of the American Statistical Association

Year:

2008

Language:

english

File:

PDF, 1.45 MB

english, 2008

29

Modeling the DNA copy number aberration patterns in observational high-throughput cancer data

van Wieringen, Wessel N., Roś, Beata P., Wilting, Saskia M.

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2013

Language:

english

File:

PDF, 4.18 MB

english, 2013

30

Penalized differential pathway analysis of integrative oncogenomics studies

van Wieringen, Wessel N., van de Wiel, Mark A.

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2014

Language:

english

File:

PDF, 1.55 MB

english, 2014

31

Exploratory Factor Analysis of Pathway Copy Number Data with an Application Towards the Integration with Gene Expression Data

Van Wieringen, Wessel N., Van De Wiel, Mark A.

Journal:

Journal of Computational Biology

Year:

2011

Language:

english

File:

PDF, 748 KB

english, 2011

32

The effect of video‐modelling and video‐feedback on the learning of the tennis service by novices

Emmen, H. H., Wesseling, L. G., Bootsma, R. J., Whiting, H. T. A., van Wieringen, P. C. W.

Journal:

Journal of Sports Sciences

Year:

1985

Language:

english

File:

PDF, 729 KB

english, 1985

33

tigaR: integrative significance analysis of temporal differential gene expression induced by genomic abnormalities

Miok, Viktorian, Wilting, Saskia M, van de Wiel, Mark A, Jaspers, Annelieke, van Noort, Paula I, Brakenhoff, Ruud H, Snijders, Peter JF, Steenbergen, Renske DM, van Wieringen, Wessel N

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 993 KB

english, 2014

34

Restricted Diffusion in Vanishing White Matter

van der Lei, Hannemieke D. W., Steenweg, Marjan E., Bugiani, Marianna, Pouwels, Petra J. W., Vent, Inge M., Barkhof, Frederik, van Wieringen, Wessel N., van der Knaap, Marjo S.

Journal:

Archives of Neurology

Year:

2012

Language:

english

File:

PDF, 356 KB

english, 2012

35

A Random Coefficients Model for Regional Co-Expression Associated with DNA Copy Number

van Wieringen, Wessel N, Berkhof, Johannes, van de Wiel, Mark A

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.10 MB

english, 2010

36

A Comparison of Methods for the Evaluation of Binary Measurement Systems

van Wieringen, Wessel N., van den Heuvel, Edwin R.

Journal:

Quality Engineering

Year:

2005

Language:

english

File:

PDF, 445 KB

english, 2005

37

Transcriptomic Heterogeneity in Cancer as a Consequence of Dysregulation of the Gene–Gene Interaction Network

van Wieringen, Wessel N., van der Vaart, Aad W.

Journal:

Bulletin of Mathematical Biology

Year:

2015

Language:

english

File:

PDF, 1.26 MB

english, 2015

38

Better prediction by use of co-data: adaptive group-regularized ridge regression

van de Wiel, Mark A., Lien, Tonje G., Verlaat, Wina, van Wieringen, Wessel N., Wilting, Saskia M.

Journal:

Statistics in Medicine

Year:

2016

Language:

english

File:

PDF, 381 KB

english, 2016

39

Distinguishing Three Unprofessional Behavior Profiles of Medical Students Using Latent Class Analysis

Mak-van der Vossen, Marianne C., van Mook, Walther N.K.A., Kors, Joyce M., van Wieringen, Wessel N., Peerdeman, Saskia M., Croiset, Gerda, Kusurkar, Rashmi A.

Journal:

Academic Medicine

Year:

2016

Language:

english

File:

PDF, 290 KB

english, 2016

40

Quantitative MRI in hypomyelinating disorders

Steenweg, Marjan E., Wolf, Nicole I., van Wieringen, Wessel N., Barkhof, Frederik, van der Knaap, Marjo S., Pouwels, Petra J.W.

Journal:

Year:

2016

Language:

english

File:

PDF, 432 KB

english, 2016

41

Modeling association between DNA copy number and gene expression with constrained piecewise linear regression splines

Leday, Gwenaël G. R., van der Vaart, Aad W., van Wieringen, Wessel N., van de Wiel, Mark A.

Journal:

The Annals of Applied Statistics

Year:

2013

Language:

english

File:

PDF, 547 KB

english, 2013

42

On the mean squared error of the ridge estimator of the covariance and precision matrix

van Wieringen, Wessel N.

Journal:

Statistics & Probability Letters

Year:

2017

Language:

english

File:

PDF, 428 KB

english, 2017

43

4H Leukodystrophy: A Brain Magnetic Resonance Imaging Scoring System

Vrij-van den Bos, Suzanne, Hol, Janna, La Piana, Roberta, Harting, Inga, Vanderver, Adeline, Barkhof, Frederik, Cayami, Ferdy, van Wieringen, Wessel, Pouwels, Petra, van der Knaap, Marjo, Bernard, Gen

Journal:

Neuropediatrics

Year:

2017

Language:

english

File:

PDF, 372 KB

english, 2017

44

Cytotoxic Effects of the Therapeutic Radionuclide Rhenium-188 Combined with Taxanes in Human Prostate Carcinoma Cell Lines

Lange, Rogier, Heine, Rob ter, van Wieringen, Wessel N., Tromp, Adrienne M., Paap, Mayke, Bloemendal, Haiko J., de Klerk, John M.H., Hendrikse, N. Harry, Geldof, Albert A.

Journal:

Cancer Biotherapy & Radiopharmaceuticals

Year:

2017

Language:

english

File:

PDF, 323 KB

english, 2017

45

Gene network reconstruction using global-local shrinkage priors

Leday, Gwenaël G. R., de Gunst, Mathisca C. M., Kpogbezan, Gino B., van der Vaart, Aad W., van Wieringen, Wessel N., van de Wiel, Mark A.

Journal:

The Annals of Applied Statistics

Year:

2017

Language:

english

File:

PDF, 2.14 MB

english, 2017

46

The Local and Systemic Inflammatory Response in a Pig Burn Wound Model With a Pivotal Role for Complement

Korkmaz, H. Ibrahim, Ulrich, Magda M. W., van Wieringen, Wessel N., Vlig, Marcel, Emmens, Reindert W., Meyer, Klaas W., Sinnige, Paul, Krijnen, Paul A. J., van Zuijlen, Paul P. M., Niessen, Hans W. M.

Journal:

Journal of Burn Care & Research

Year:

2016

Language:

english

File:

PDF, 529 KB

english, 2016

47

Testing for pathway (in)activation by using Gaussian graphical models

van Wieringen, Wessel N., Peeters, Carel F. W., de Menezes, Renee X., van de Wiel, Mark A.

Journal:

Journal of the Royal Statistical Society: Series C (Applied Statistics)

Year:

2018

Language:

english

File:

PDF, 670 KB

english, 2018

48

Ridge estimation of network models from time-course omics data

Miok, Viktorian, Wilting, Saskia M., van Wieringen, Wessel N.

Journal:

Biometrical Journal

Year:

2018

Language:

english

File:

PDF, 1.44 MB

english, 2018

49

A test for detecting differential indirect trans effects between two groups of samples

Chaturvedi, Nimisha, Menezes, Renée X. de, Goeman, Jelle J., Wieringen, Wessel van

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2018

Language:

english

File:

PDF, 1.63 MB

english, 2018

50

Measurement System Analysis for Binary Inspection: Continuous Versus Dichotomous Measurands

De Mast, Jeroen, Erdmann, Tashi P., Van Wieringen, Wessel N.

Journal:

Journal of Quality Technology

Year:

2011

Language:

english

File:

PDF, 667 KB

english, 2011